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17/01/2023, 08:30
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17/01/2023, 09:15
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Dr Christian Bittner (Servicestelle Forschungsdaten SFD-ULB, Uni-Bonn)17/01/2023, 09:25
Research Data Management and the FAIR principles are becoming science policy mainstream. They are increasingly demanded on different levels by decision makers, funders and research institutions alike.
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Yet, many scientific communities still lack established conventions, guidelines and infrastructures for handling research data properly. This makes it difficult for many researchers to implement... -
Prof. Konrad Förstner (ZB MED)17/01/2023, 09:55
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Nicholas DelGrosso17/01/2023, 11:00
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Prof. Christian Bauckhage (IAI)17/01/2023, 11:30
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Prof. Elena Demidova (Institut für Informatik, Universität Bonn)17/01/2023, 12:00
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Juliane Fluck (uni-bonn)17/01/2023, 13:30
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Domenic Zingsheim (Institute for Computer Science II (Uni Bonn))17/01/2023, 13:50
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Jan-Henrik Haunert (uni-bonn)17/01/2023, 14:10
FAIRagro: FAIR Data Infrastructure for Agrosystems
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Matthias Lang (uni-bonn)17/01/2023, 14:30
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Philip Bechtle (uni-bonn)17/01/2023, 14:50
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Oliver Freyermuth (University of Bonn)17/01/2023, 15:30
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Dr Sergej Zerr (Servicestelle Forschungsdaten SFD-HRZ, Uni-Bonn)17/01/2023, 15:50
In this presentation, we will provide an overview of the technical infrastructure and services to support scientists at Bonn University throughout the research data life cycle. The overview includes services such as data storage infrastructure, research data repositories, and electronic lab notebooks.
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Joachim L. Schultze (DZNE, Universität Bonn), Joachim Schultze (uni-bonn)18/01/2023, 09:00
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Jan Hasenauer (Faculty of Mathematics and Natural Sciences, Rheinische Friedrich-Wilhelms-Universität Bonn, 53115 Bonn, Germany)18/01/2023, 09:30
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Dr Dirk Barbi (HPC Team Leader at HRZ, University of Bonn)18/01/2023, 10:00
Infrastructures for high performance and high throughput computing.
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Dr Daniel Rudolf (Servicestelle Forschungsdaten SFD-ULB, Uni-Bonn)18/01/2023, 10:50
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Dr Ewa Bres (Servicestelle Forschungsdaten SFD-ULB, Uni-Bonn)18/01/2023, 10:50
Digitization is changing day-to-day research practices across all fields of academic inquiry. Research data of every kind are collected, processed, analyzed, published and archived in digital systems. The term Research Data Management (RDM) refers to a range of activities and topics relating to the handling of digital research data.
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In this hands-on workshop the focus will be on data... -
Marion Pitz (uni-bonn)Poster
Cross-pollinated F1-hybrids are more vigorous than their parents, produce more biomass, have a faster development and greater fertility. This phenotypic variation between the parental mean and the hybrid is often accompanied by transcriptomic variance. The transcriptome is an important link between the genome and the phenotype of organisms. Sequencing the messenger RNA (mRNA) captures the...
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Florian Boecker (uni-bonn)Poster
Genome-scale protein annotation can be performed by the transfer of functions from known proteins matched via sequence similarity. Errors can propagate when annotations falsely generated in this manner make their way into public databases and are used as basis for subsequent function transfers. Our program ''Automatic assignment of Human Readable Descriptions'' (AHRD) can overcome these...
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Dr Jens Tillmann (University Bonn, Medical Center)Poster
We present a pipeline for analyzing long-term video monitoring data from a mouse model of epilepsy. Mice were constantly monitored for 5 consecutive days, generating a large amount of high-resolution video data. Subsequently, we apply markerless pose estimation of user-defined body parts using deep neural networks (DNNs) to extract exact 2D motion data. To automatically identify behavioral...
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Petra Mutzel (uni-bonn)Poster
The Collaborative Research Centre DETECT (CRC 1502) relies heavily on numerical modeling, data processing, and analysis. In this context a Central Supercomputing Support project has been established, which is responsible for: (i) Providing basic support for a multitude of HPC-related issues, (ii) helping with model development (iii) model simulation support (iv) training of early-career...
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Domenic Zingsheim (Institute for Computer Science II (Uni Bonn))Poster
Since its inception, computer graphics research is focused on modeling and creating computer-generated content that captures the appearance of the real world. For several decades, a lot of work went into reconstructing objects and scenes through photographs and other capturing methods. This does not only include geometry acquisition but also material and appearance reconstruction. In more...
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Simon Görgen (uni-bonn)Poster
The SFB/Transregio 237 explores the mechanisms and functional consequences of Nucleic Acid Immunity. On the one hand, we focus on gaining fundamental insights into the specific molecular mechanisms that control the defense against pathogen-derived foreign nucleic acids. On the other hand, we address the functional role of this system in health and disease at the systemic level of the whole...
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Dominik Brajtenbach (uni-bonn)Poster
Modern advancements in the field of fluorescence microscopy generate large amounts of data in the form of image files. However, it becomes more problematic when it comes to modify, evaluate and analyze image files of different types. And if this was not enough, corresponding raw data needs to be generated not only in two dimensions, but sometimes in three dimensions. Additionally, acquisition...
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Gregor Hagelüken (Institute of Structural Biology, University of Bonn)Poster
At the Institute of Structural Biology we aim to unravel structure-function relationships in biological macromolecules. For this purpose we use state of the art methods such as cryo-EM and X-ray crystallography to determine experimental structures of macromolecules. We also provide various in silico labelling tools ("http://www.mtsslsuite.isb.ukbonn.de/") for scientists in the EPR- and FRET...
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Ms Maureen Nabatanzi (uni-bonn)Poster
Background
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Scientific research often involves collection, storage, analysis and reporting large amounts of multi-disciplinary and multi-site data. Data should be findable, accessible, interoperable, and reusable.
We present common obstacles and propose solutions.
Challenges
- Infrastructure for real-time collection and sharing across networks
- Maintaining privacy of open access data... -
Juliane von der Heyde (uni-bonn), Mark Berardi (uni-bonn)Poster
School teachers are disproportionately more likely to experience voice problems compared to the general population. One understudied component of this elevated risk is the role of stress on motor control for voice and speech production. The goal of this study is to determine the functional and clinical relevance of stress on the motor control for voice and speech production in the brain and...
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Fernanda Silva Martinelli (uni-bonn)Poster
Sustainable development projects often rely on a multitude of data sets from multiple sources given their trans-disciplinary profile. The EU-funded CLEVER (Creating Leverage to Enhance Biodiversity Outcome of Global Biomass) research project crosscuts several disciplines by aiming to quantifying biodiversity and other impacts of trade in major raw and processed non-food biomass value chains....
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Mr Niklas Heidemann (uni-bonn, Geophysics Section)Poster
In Geophysics, physical methods are applied to the earth's subsurface and related objects of investigation on both laboratory and field scale.
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The data resulting from measurements and synthetic modeling are acquired mostly digitally or are at least managed in digital data structures in order to be analysed both quantitatively and qualitatively.
Therefore, the digital infrastructure for... -
Jochen Garcke (uni-bonn)Poster
Numerical simulations of car crashes are a key component of the virtual product research and development process in the automotive industry. In recent decades, virtual crash tests of vehicles on the computer, using commercial simulation software, supplemented the costly physical testing-only option. Nowadays, virtual crash tests outnumber their physical counterparts during the development of...
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Rogelio Madrueño (uni-bonn)Poster
Introduction and Punch line:
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•The GTI based on Chat GPT + Excel aims to show the
position of a country and eight global (sub)geographic regions
in the context of an emerging constellation of transnational
threats.
• Research question: To what extent have global threats
pervaded the multiple facets of human security and how AI
can be helpful to provide prompt and timely information?
•... -
Mindaugas Sarpis (Helmholtz-Institut für Strahlen- und Kernphysik)Poster
LHCb and other experiments at CERN have the commitment to make the collected data
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available to the public. In December of 2022, LHCb has released the first data set
containing 200 Terabytes of data from proton-proton collisions collected in the years
2011 and 2012 (Run1 of the LHC). This data is now available through CERN Open Data Portal.
The aim of the open data release is to... -
The High Performance Computing & Analytics Lab (University of Bonn)Poster
High Performance Computing (HPC) leverages the power of multiple compute nodes and architectures to solve complex problems, often with large data sets. Typical applications range from large scale simulations to machine learning and data analysis. The University of Bonn maintains several HPC clusters for specialized and general purposes, such as a massively parallel computing system with GPU...
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Malte Petersen (uni-bonn)Poster
High Performance Computing (HPC) leverages the power of multiple compute nodes and architectures to solve complex problems, often with large data sets. Typical applications range from large scale simulations to machine learning and data analysis. The University of Bonn maintains several HPC clusters for specialized and general purposes, such as a massively parallel computing system with GPU...
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Dr Sergej Zerr (Hochschulrechenzentrum, Bonn University)Poster
This poster is focussing on improving the process of research dataset discovery by developing machine learning models that can estimate the similarity between two datasets. In addition to traditional keyword-based search methods, the relevance of a dataset can also be determined by its similarity to existing, relevant datasets. The proposed models incorporate metadata about the datasets as...
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Steven Geysen (uni-bonn)Poster
Abstract
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Open science principles (such as sharing ideas, data, and results; Merton, 1973) have not yet been fully adopted by the neuroscientific community impeding replications of research results (e.g., Poldrack et al., 2017). Apart from the actual data analysis, analytical flexibility regarding preprocessing of the MRI data can lead to varying study results (Botvinik-Nezer, et al., 2020).... -
Mrs Elizabeth Stauß (uni-bonn)Poster
The OpenMuseum is a digital platform that provides access to the collections of the University of Bonn. The platform is a combined tool for research, cataloguing, teaching and outreach, thus providing an access to cultural heritage collections curated for diverse social groups and user communities. The OpenMuseum allows these collections to be used for their respective interests (FAIR and CARE...
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Mr Tim Griesbach (University of Bonn Institute for Numerical Simulation)Poster
A key to defining the organizational structure of simulation data is the
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computational mesh. It encodes where in space, and possibly in time,
simulation data points are located. This is essential for the inner
functioning of the simulation on the one hand and for in-situ processing,
storing, and post-processing the data on the other. The primary danger is
losing the parallel, highly... -
Lucia Vedder (University of Bonn), Annika Bonerath (University of Bonn)Poster
Our poster presents the data management strategy of the cluster of excellence PhenoRob from the University of Bonn. PhenoRob is an interdisciplinary project that combines research from robotics and phenotyping and aims for sustainable crop production. Due to the interdisciplinarity, we deal with very heterogeneous data from different research fields, with multiple file formats, and varying...
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Johannes Fröh (uni-bonn)Poster
Theology has a long history of working with (primarily text-based) artifacts. Until recently, digitization was used for digitizing those artifacts rather than considering the "new" digital world itself as holding significance for theological research. Consequently, questions related to research data management (RDM) infrastructure and the application of data scientific methodologies are still...
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Karoline Mauer (DZNE)Poster
Metadata is structured information that describes data objects. It gives the data user the necessary context to extract information from the data. In research, metadata is essential for data quality checks, interpreting findings, and reproducing experiments. Currently, each institute or group has its own catalog of metadata they require for experiments and subsequent analyses. This makes data...
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Bartosz Kostrzewa (Univ. of Bonn, High Performance Computing & Analytics Lab)Poster
Research in Lattice Quantum Field Theory (LQFT) is performed by international collaborations in both overlapping and disjoint research projects studying a wide range of non-perturbative physical problems. The generated data, which can roughly be classified into three tiers, span the whole spectrum of storage, metadata and lifetime requirements.
LQFT simulations are some of the most...
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Dr Olaf Stein (Forschungszentrum Jülich)Poster
Within the Collaborative Research Centre 1502, DETECT, large amounts of research data from various sources are being produced and shared between the CRC partners and to the outside world. These sources comprise model input and output data, observational data from satellites and large networks as well as economical and statistical information affecting land use and land cover developments....
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Margrit Klitz (DZNE)Poster
The Rhineland Study is an ongoing prospective population-based cohort study in Bonn. Its two study centers are located in Beuel and Duisdorf, where all residents ≥30 years are invited to participate. The participants undergo a broad range of examinations including, e.g., assessment of cardiovascular measures, brain imaging, cognitive testing and neurologic functioning with the aim to the find...
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Lea Seep (Faculty of Mathematics and Natural Sciences, Rheinische Friedrich-Wilhelms-Universität Bonn)Poster
Efficient, extendible knowledge representation and reasoning enabling data mining and data visualization is becoming increasingly important in systems biology due to the constant growth, accumulation and availability of vast multi-variate and multi-modal data sets rendered possible through former and recent advantages in e.g., high-throughput experimental measuring techniques, i.e., omics and...
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Dr Michael Lang (HISKP)Poster
The bound states of the strong interaction of hadrons is one of the worst understood areas of the standard-model of particle physics. Main questions are how the strong interaction produces its massive bound states from almost massless quarks and which (exotic) hadrons do exist. In order to investigate this, experiments are carried-out at ELSA and other accelerators in the world.
This poster...
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Prof. Jan-Henrik Haunert (Institute of Geodesy and Geoinformation, University of Bonn, Bonn, Germany)Poster
The Collaborative Research Centre 1502, DETECT, deals with the various anthropogenic changes affecting energy and water redistribution in the atmosphere and subsurface. For this, a considerable amount of data is being used. Experts from DETECT, including hydrologists, meteorologists, land use modelers, geodesists, remote sensing experts, agricultural economists, and social scientists, will use...
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Dr Ewa Bres (Servicestelle Forschungsdaten uni-bonn)Poster
Digitization is changing day-to-day research practices across all fields of academic inquiry. Research data of every kind are collected, processed, analyzed, published and archived in digital systems. The term Research Data Management (RDM) refers to a range of activities and topics relating to the handling of digital research data, including technical, methodological, organizational and legal...
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Michael Johnson (Max Planck Institute for Radio Astronomy), Dr Kristen Lackeos (Max Planck Institute for Radio Astronomy)Poster
We have developed VAMPIRA, software capable of automatically generating provenance for data-intensive scientific workflows. Provenance generated by VAMPIRA describes the record of the data processing, metadata, infrastructure and user data involved within a workflow as well as the interactions between them. Armed with this extra information, scientists will be able to make more informed...
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